Archive for the ‘Proteomics and Protein Markers’ Category
In Search for a Better Marker of Acute Pancreatitis–Third Time Lucky? [Editorial]
Written by Viljoen, A., Patrick, J. T. on October 28, 2011 – 9:31 pm -Tags: chemistry, clinic
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Specific Immunoassay Reveals Increased Serum Trypsinogen 3 in Acute Pancreatitis [Proteomics and Protein Markers]
Written by Oiva, J., Itkonen, O., Koistinen, R., Hotakainen, K., Zhang, W.-M., Kemppainen, E., Puolakkainen, P., Kylanpaa, L., Stenman, U.-H., Koistinen, H. on October 28, 2011 – 9:31 pm -Trypsinogen 3 is a minor trypsinogen isoform in the pancreas. In contrast with trypsin 1 and 2, trypsin 3 degrades pancreatic secretory trypsin inhibitor, which may lead to an excess of active trypsin and acute pancreatitis (AP). We developed an immunoassay for trypsinogen 3 and studied whether an assay of serum trypsinogen 3 is of clinical utility in the diagnosis of AP.
METHODS:Monoclonal antibodies were generated using recombinant human trypsinogen 3 as the antigen and used to establish a sandwich-type immunoassay. We analyzed serum trypsinogen 3 concentrations in 82 patients with AP and 63 patients with upper abdominal pain (controls). The reference interval was determined using serum samples from 172 apparently healthy individuals.
RESULTS:The measuring range of the trypsinogen 3 assay was 1.0–250 μg/L. Intra- and interassay CVs were <11%, and cross-reactivity with other trypsinogen isoenzymes was <0.1%. The median trypsinogen 3 concentration in serum from healthy individuals was <1.0 μg/L, and the upper reference limit was 4.4 μg/L. We observed increased trypsinogen 3 concentrations in patients with mild (median 9.5 μg/L) and severe (15.0 μg/L) AP; in both groups, the concentrations were significantly higher than in controls (median <1.0 μg/L) (P < 0.0001). In ROC analysis, the area under the curve of trypsinogen 3 for separation between AP and controls was 0.90 (P < 0.0001).
CONCLUSIONS:We established for the first time a specific immunoassay for trypsinogen 3 using monoclonal antibodies. Patients with AP were found to have increased serum concentrations of trypsinogen 3. The availability of this assay will be useful for studies of the clinical utility of trypsinogen 3.
Tags: chemistry, clinic
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Too Many Roads Not Taken in Biomarker Discovery: The Story of Missing Tools [News & Views]
Written by Agger, S. A. on October 28, 2011 – 9:31 pm -Tags: chemistry, clinic
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Painting a Moving Picture: Large-Scale Proteomics Efforts and Their Potential for Changing Patient Care [Q&A]
Written by Hoofnagle, A. N., Aebersold, R., Anderson, N. L., Felsenfeld, A., Liebler, D. C. on September 28, 2011 – 11:05 pm -Tags: chemistry, clinic
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Prognostic Utility of Secretory Phospholipase A2 in Patients with Stable Coronary Artery Disease [Proteomics and Protein Markers]
Written by O'Donoghue, M. L., Mallat, Z., Morrow, D. A., Benessiano, J., Sloan, S., Omland, T., Solomon, S. D., Braunwald, E., Tedgui, A., Sabatine, M. S. on August 26, 2011 – 9:31 pm -Secretory phospholipase A2 (sPLA2) may contribute to atherogenesis. To date, few prospective studies have examined the utility of sPLA2 for risk stratification in coronary artery disease (CAD).
METHODS:We measured plasma sPLA2 activity at baseline in 3708 subjects in the PEACE randomized trial of trandolapril vs placebo in stable CAD. Median follow-up was 4.8 years. We used Cox regression to adjust for demographics, clinical risk factors, apolipoprotein B, apolipoprotein A1, and medications.
RESULTS:After multivariable adjustment, sPLA2 was associated with an increased risk of cardiovascular death, myocardial infarction, or stroke (adjusted hazard ratio Q4:Q1 1.55, 95% CI 1.13–2.14) and cardiovascular death or heart failure (1.91, 1.20–3.03). In further multivariable assessment, increased activity levels of sPLA2 were associated with the risk of cardiovascular death, myocardial infarction, or stroke (adjusted hazard ratio 1.47, 95% CI 1.06–2.04), independent of lipoprotein-associated phospholipase A2 mass and C-reactive protein, and modestly improved the area under the curve (AUC) beyond established clinical risk factors (AUC 0.668–0.675, P = 0.01). sPLA2, N-terminal pro-B-type natriuretic peptide, and high-sensitivity cardiac troponin T all were independently associated with cardiovascular death or heart failure, and each improved risk discrimination (P = 0.02, P < 0.001, P < 0.001, respectively).
CONCLUSIONS:sPLA2 activity provides independent prognostic information beyond established risk markers in patients with stable CAD. These data are encouraging for studies designed to evaluate the role of sPLA2 as a therapeutic target.
Tags: chemistry, clinic
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N-Terminal Pro-Atrial Natriuretic Peptide Measurement in Plasma Suggests Covalent Modification [Brief Communication]
Written by Hunter, I., Alehagen, U., Dahlstrom, U., Rehfeld, J. F., Crimmins, D. L., Goetze, J. P. on August 26, 2011 – 9:31 pm -The N-terminal fragment of cardiac-derived pro–B-type natriuretic peptide is a glycosylated polypeptide. It is unknown whether N-terminal pro–atrial natriuretic peptide (proANP) fragments are also covalently modified. We therefore evaluated the clinical performance of 2 distinctly different proANP assays on clinical outcome.
METHODS:We examined 474 elderly patients with symptoms of heart failure presenting in a primary healthcare setting. Samples were analyzed with an automated immunoluminometric midregion proANP (MR-proANP) assay and a new processing-independent assay (PIA) developed in our laboratory. The results were compared with Bland–Altman plots, and clinical performance was assessed by generating ROC curves for different clinical outcomes.
RESULTS:Despite linear regression results indicating a good correlation (r = 0.85; P < 0.0001), the PIA measured considerably more proANP than the MR-proANP assay (mean difference, 663 pmol/L; SD, 478 pmol/L). In contrast, the clinical performances of the 2 assays [as assessed by the area under the ROC curve (AUC)] in detecting left ventricular dysfunction were similar [proANP PIA, 0.71 (95% CI, 0.63–0.79); MR-proANP assay, 0.74 (95% CI, 0.66–0.81); P = 0.32]. The prognostic ability to report cardiovascular mortality during a 10-year follow-up revealed AUC values of 0.66 (95% CI, 0.60–0.71) for the proANP PIA and 0.69 (95% CI, 0.63–0.74) for the MR-proANP assay (P = 0.08, for comparing the 2 assays).
CONCLUSIONS:Our data suggest that N-terminal proANP fragments in patient plasma differ from the calibrator peptides used but that the difference does not affect ROC curves in an elderly cohort of patients with mild to moderate heart failure. We suggest that human N-terminal proANP fragments can be covalently modified.
Tags: chemistry, clinic
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Prognostic Value of Emerging Neurohormones in Inveterate Kindliness Decay during Optimization of Spunk Failure-Specific Remedy [Proteomics and Protein Markers] <<>>
Written by Neuhold, S., Huelsmann, M., Strunk, G., Struck, J., Adlbrecht, C., Gouya, G., Elhenicky, M., Pacher, R. on January 1, 1970 – 1:00 am -Background: Serial measurements of neurohormones oblige been shown to increase prognostication in the environs of grave sentiments breakdown (HF) or dyed in the wool HF without therapeutical intervention. We investigated the prognostic job of serial measurements of emerging neurohormones and BNP in a confederate of lingering HF patients undergoing increases in HF-specific treatment.
Methods: In this expected research we included 181 patients with lasting systolic HF after an event of hospitalization for worsening HF. Subsequently, HF psychoanalysis was calibrate increased in the outpatient stage set until optimized. We predetermined copeptin, midregional proadrenomedullin, C-terminal endothelin-1 harbinger fragment, midregional proatrial natriuretic peptide, and B-type natriuretic peptide in the future and after optimization of HF psychoanalysis. The principal endpoint was all-cause mortality at 24 months.
Results: Angiotensin-converting enzyme/angiotensin receptor blocker and β-blockers were increased significantly during the 3-month titration aeon (P < 0.0001 for both). In a stepwise Cox regression scrutiny adjusted for age, sex, glomerular filtration rate, diabetes mellitus, and ischemic HF, baseline and follow-up neurohormone concentrations were predictors of the first-rate endpoint as follows (baseline danger ratios): copeptin 1.92, 95% CI 1.233–3.007, P = 0.004; midregional proadrenomedullin 2.79, 95% CI 1.297–5.995, P = 0.009; midregional proatrial natriuretic peptide 2.05, 95% CI 1.136–3.686, P = 0.017; C-terminal endothelin-1 herald go to pieces 2.24, 95% CI 1.133–4.425, P = 0.025; B-type natriuretic peptide 1.46, 95% CI 1.039–2.050, P = 0.029.
Conclusions: In pharmacologically unsettled long-lasting HF patients, baseline values and follow-up measures of copeptin, midregional proadrenomedullin, C-terminal endothelin-1 vanguard fragment, midregional proatrial natriuretic peptide, and B-type natriuretic peptide were equally predictive of all-cause mortality. Reliant on coppers of neurohormone values was noncontributory.
<<>>Tags: chemistry, clinic
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Increased Confirmation Banker H with Decreased Representative B Definite by Proteomic Differential Displays as a Biomarker of Tai Chi Chuan Perturb [Brief Communications] <<>>
Written by Yang, K. D., Chang, W.-C., Chuang, H., Wang, P.-W., Liu, R.-T., Yeh, S.-H. on January 1, 1970 – 1:00 am -Background: All-out working-out can be associated with short-term safe suppression, but soothe drive up the wall such as tai chi chuan (TCC) has been shown to from helpful effects on amnesty. The mechanisms for the healthiness benefits of employ stay behind to be determined, and no implied biomarkers for these supportive trim effects partake of been identified. This read investigated serum proteomic markers in individuals participating in TCC employ.
Methods: Two-dimensional fluorescence incongruity gel electrophoresis was cast-off to approach proteomic markers in 3 individuals earlier and after 12 weeks of TCC harass. The unalike protein spots were identified by mound spectrometry and validated in an additional 20 individuals by western smudge examination.
Results: We identified 39 protein spots for 18 proteins with a recognizable swell or diminution after TCC employ. Validation of the differentially displayed proteins with 20 paired pre- and postexercise samples revealed a informative strengthen in supplement financier H (P = 0.0034) associated with decreases in C1 esterase inhibitor (P = 0.0038) and add to deputy B (P = 0.0029).
Conclusions: In this fundamental about of proteomic biomarkers of TCC exercise, we institute an further in round out intermediary H associated with a shrivelling in add to representative B. Finishing touch banker H is knotty in shield from microangiopathy and macular degeneration and may role a practical marker of the trim effects of performance.
<<>>Tags: chemistry, clinic
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Introduction: Advances in Protein Scrutiny for the Clinical Laboratory [Preamble] <<>>
Written by Hortin, G. L., Carr, S. A., Anderson, N. L. on January 1, 1970 – 1:00 am -Tags: chemistry, clinic
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Adventures in Clinical Chemistry and Proteomics: A Critical Account [Reflection] <<>>
Written by Anderson, N. G. on January 1, 1970 – 1:00 am -Tags: chemistry, clinic
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Quantitative Clinical Proteomics by Translucent Chromatography-Tandem Forgather Spectrometry: Assessing the Programme [Perspective] <<>>
Written by Hoofnagle, A. N. on January 1, 1970 – 1:00 am -Tags: chemistry, clinic
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Protein-Based Multiplex Assays: Counterfeit Presubmissions to the US Eats and Painkiller Application [Special Reports] <<>>
Written by Regnier, F. E., Skates, S. J., Mesri, M., Rodriguez, H., Tezak, Z., Kondratovich, M. V., Alterman, M. A., Levin, J. D., Roscoe, D., Reilly, E., Callaghan, J., Kelm, K., Brown, D., Philip, R., Carr, S. A., Liebler, D. C., Fisher, S. J., Tempst, P., Hi on January 1, 1970 – 1:00 am -As a in most cases of progressing efforts of the NCI-FDA Interagency Oncology Mission Coercion subcommittee on molecular diagnostics, members of the Clinical Proteomic Technology Assessment for Cancer program of the State Cancer Begin hold submitted 2 protein-based multiplex assay descriptions to the Job of In Vitro Diagnostic Inclination Approximation and Safety, US Victuals and Cure-all Oversight. The neutral was to determine the analytical evaluation criteria and studies needed to validate protein-based multiplex assays. Each capitulation described a unusual protein-based platform: a multiplex immunoaffinity volume spectrometry principles for protein quantification, and an immunological array stage quantifying glycoprotein isoforms. Submissions provided a mutually salubrious way for members of the proteomics and regulatory communities to tag the analytical issues that the react to should talk when developing protein-based multiplex clinical assays.
<<>>Tags: chemistry, clinic
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Proteomics Analyse to Root Markers: What Can We Learn from Netflix(R)? [Mini-Reviews] <<>>
Written by Ransohoff, D. F. on January 1, 1970 – 1:00 am -Background: Study in the American football gridiron of proteomics to encounter markers for detection of cancer has produced dissatisfying results, with few markers gaining US Aliment and Opiate Management approval, and few claims borne out when afterward tested in rigorous studies. What is the task of more advisedly precise or statistical examination in improving the situation?
Content: This article examines whether a current famed Netflix-sponsored contention using arithmetical enquiry to bare a intimation follow for motion picture ratings of distinct subscribers can fulfil to rally studies of markers in the American football gridiron of proteomics. Netflix developed a database of moving picture preferences of peculiar subscribers using a longitudinal squad delving intend. Groups of researchers then competed to come forth more wisely ways to analyze the matter. Against this background, the strengths and weaknesses of examination work are reviewed, contrasting the Netflix delineation with that of studies of biomarkers to notice cancer. Such biomarker studies as a rule eat less-strong design, moderate numbers of outcomes, and greater snag in yet valid measuring predictors and outcomes, so the law materials that choice be habituated to in exact inquiry disposed to be much weaker than in other kinds of inquiry.
Conclusions: If the sine qua non figures that want be analyzed are not strong, then advantage analytic methods eat minimal use in improving the circumstances. Notice of this position is an snotty commencement fitting for toward improving the excellence of clinical investigating exchange markers to catch cancer.
<<>>Tags: chemistry, clinic
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The Clinical Plasma Proteome: A Inspect of Clinical Assays for Proteins in Plasma and Serum [Mini-Reviews] <<>>
Written by Anderson, N. L. on January 1, 1970 – 1:00 am -An scrutiny of all US Provisions and Cure Charge (FDA) approvals for protein-based assays throughout 2008 reveals 109 peerless protein targets in plasma or serum, as profoundly as 62 additional tests for peptides, protein posttranslational modifications, protein complexes, autoantibodies against endogenous proteins, and blood room proteins. A what is more 96 peerless protein targets are assayed in plasma by laboratory-developed tests at for clinical use in the US, pliant a add up of 205 proteins that group products of close to 211 genes (excluding immunoglobulins). These tests provender quantitative measurements for generally 1% of the individual protein gene products, defining a useable clinical plasma proteome. The at all events of introduction of new protein analytes has remained essentially exact from the gone and forgotten 15 years, averaging 1.5 new proteins per year (median of 1 per year). This count falls far impecunious of that needed to advocate projected medical needs and indicates weighty deficiencies in the protein biomarker pipeline, from which no proteomics-discovered analytes be undergoing yet emerged.
<<>>Tags: chemistry, clinic
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Antibody-Based Protein Multiplex Platforms: Complex and Operational Challenges [Mini-Reviews] <<>>
Written by Ellington, A. A., Kullo, I. J., Bailey, K. R., Klee, G. G. on January 1, 1970 – 1:00 am -Background: The square of multiple protein biomarkers may improve jeopardize stratification in clinical settings. This concept has stimulated progress of multiplexed immunoassay platforms that take care of multiple, reiterate protein measurements on the verbatim at the same time instance.
Content: We victual an overview of antibody-based multiplexed immunoassay platforms and examine mechanical and operational challenges. Multiplexed immunoassays use habitual immunoassay principles in which high-affinity seizure ligands are immobilized in correspond to arrays in either planar composition or on microspheres in deferment. Happening of multiplexed immunoassays requires rigorous validation of assay configuration and analytical show to underrate assay imprecision and inaccuracy. Challenges associated with multiplex configuration embrace pick and immobilization of apprehend ligands, calibration, inhibition mediator antibodies and proteins and assay diluents, and compatibility of assay limits of quantification. We examine developing solutions to these challenges. Criteria for assessing analytical multiplex assay show cover the rove of linearity, analytical specificity, recovery, and comparability to a grandeur relation method. Eminence calmness materials are not entirely developed for multiplexed protein immunoassays, and algorithms for interpreting multiplex superiority self-discipline information are needed.
Summary: Technological and operational challenges set up hindered implementation of multiplexed assays in clinical settings. Formal procedures that director multiplex assay configuration, analytical validation, and status imperturbability are needed sooner than vulgar perseverance of multiplexed arrays can suggest itself to in the in vitro diagnostic sell.
<<>>Tags: chemistry, clinic
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